Protein ZmYAB1
ZmYAB1 is a protein in the C2C2-YABBY family.
Information
TF Name: ZmYAB1
Species: Maize
TF Family: C2C2-YABBY
Gene Name(Synonym): YAB1
Uniprot ID: B4FF18
Subgenome: 1

Protein ZmYAB1

ZmYAB1 is a protein in the C2C2-YABBY family.

Overview of domains present in v5 transcripts
PF04690PF09011
Zm00001eb075520_T003
Zm00001eb075520_T001
Zm00001eb075520_T002
Zm00001eb075520_T004

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d002829DAPseq no logo sequence fimo position
Zm00001d002829DAPseq no logo sequence fimo position
Zm00001d002829ChIPseq no logo sequence fimo position
Zm00001d002829PChIPseq no logo sequence fimo position

Interactions where ZmYAB1 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmYAB1 is the target  
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There are 167 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb075520_T003 from maize genome v5

Amino Acid Sequence
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MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLDAEAMSFQAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRT
AASVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECML
FMDGLYASMGFSPF

MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLDAEAMSFQAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRT
AASVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECML
FMDGLYASMGFSPF

MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLDAEAMSFQAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRT
AASVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECML
FMDGLYASMGFSPF

MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLDAEAMSFQAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRT
AASVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECML
FMDGLYASMGFSPF

MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLDAEAMSFQAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRT
AASVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECML
FMDGLYASMGFSPF

MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLDAEAMSFQAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRT
AASVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECML
FMDGLYASMGFSPF

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF04690
PF09011
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Nucleotide Sequence
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CCCTCCCGTGCACACCCATCCACTC...

GRMZM2G054795_T01 from maize genome v3

Amino Acid Sequence
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MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLDAEAMSFQAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRT
AASVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECML
FMDGLYASMGFSPF

Nucleotide Sequence
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ACGTACTCCCTCCCGTGCACACCCA...

GRMZM2G054795_T02 from maize genome v3


Related TFome: pUT1396, pUT1398

Amino Acid Sequence
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MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRTAASVNRTS
EKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECMLFMDGLYAS
MGFSPF

Nucleotide Sequence
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GTACTCCCTCCCGTGCACACCCATC...

Zm00001d002829_T001 from maize genome v4

Amino Acid Sequence
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MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLDAEAMSFQAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRT
AASVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECML
FMDGLYASMGFSPF

Nucleotide Sequence
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ACGTACTCCCTCCCGTGCACACCCA...

Zm00001eb075520_T001 from maize genome v5

Amino Acid Sequence
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MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRTAASVNRTS
EKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNEGAECMLFMDGLYASMGFSPF

Nucleotide Sequence
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CAAGAGCCGGTGGACGGAGGCGAAG...

Zm00001eb075520_T002 from maize genome v5

Amino Acid Sequence
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MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLDAEAMSFQAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRT
AASVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNEGAECMLFMDGLYASMGFSPF

Nucleotide Sequence
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ACGTACTCCCTCCCGTGCACACCCA...

Zm00001eb075520_T004 from maize genome v5

Amino Acid Sequence
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MMSSAPEETLFNLDQQQPPPAEQEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAANNQL
PPFGQPLLSPTSPHGLLAPSLPGAEPPSACVSGVTSINNTCGGNTTTSSAMSSMAPPPAKHALQEAQQLPRTAASVNRTS
EKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKNPMQNQEGAECMLFMDGLYAS
MGFSPF

Nucleotide Sequence
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CTCCCGTGCACACCCATCCACTCGC...


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